20186 + 0 in total (QC-passed reads + QC-failed reads) 19346 + 0 primary 0 + 0 secondary 840 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 17962 + 0 mapped (88.98% : N/A) 17122 + 0 primary mapped (88.50% : N/A) 19346 + 0 paired in sequencing 9673 + 0 read1 9673 + 0 read2 15948 + 0 properly paired (82.44% : N/A) 16980 + 0 with itself and mate mapped 142 + 0 singletons (0.73% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)