Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/23 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  143,059
 Normal Paired: 128,702 (89.96%)
 Chimeric Paired: 8,289 (5.79%)
 Chimeric Ambiguous: 2,271 (1.59%)
 Unmapped: 3,797 (2.65%)
 Ligation Motif Present: 45,300 (31.67%)
Alignable (Normal+Chimeric Paired): 136,991 (95.76%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/23/aligned inter.txt
Intra-fragment Reads: 26,600 (18.59% / 19.74%)
Below MAPQ Threshold: 40,206 (28.10% / 29.84%)
Hi-C Contacts: 67,948 (47.50% / 50.42%)
 Ligation Motif Present: 32,882  (22.98% / 24.40%)
 3' Bias (Long Range): 88% - 12%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 19,954  (13.95% / 14.81%)
Intra-chromosomal: 47,994  (33.55% / 35.62%)
Short Range (<20Kb): 28,481  (19.91% / 21.14%)
Long Range (>20Kb): 19,513  (13.64% / 14.48%)