Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/3 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  1,859,055
 Normal Paired: 82,847 (4.46%)
 Chimeric Paired: 6,197 (0.33%)
 Chimeric Ambiguous: 2,272 (0.12%)
 Unmapped: 1,767,739 (95.09%)
 Ligation Motif Present: 18,584 (1.00%)
Alignable (Normal+Chimeric Paired): 89,044 (4.79%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/3/aligned inter.txt
Intra-fragment Reads: 9,455 (0.51% / 10.64%)
Below MAPQ Threshold: 19,775 (1.06% / 22.26%)
Hi-C Contacts: 59,594 (3.21% / 67.09%)
 Ligation Motif Present: 13,600  (0.73% / 15.31%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 24% - 25% - 26%
Inter-chromosomal: 12,761  (0.69% / 14.37%)
Intra-chromosomal: 46,833  (2.52% / 52.73%)
Short Range (<20Kb): 16,084  (0.87% / 18.11%)
Long Range (>20Kb): 30,749  (1.65% / 34.62%)