Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/AalbS2 -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aalb_VARYA/AalbS2_V3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aalb_VARYA/AalbS2_V3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aalb_VARYA/AalbS2_V3.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/AalbS2_V3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  67,591,619
 Normal Paired: 30,787,793 (45.55%)
 Chimeric Paired: 30,295,709 (44.82%)
 Chimeric Ambiguous: 2,614,742 (3.87%)
 Unmapped: 3,893,375 (5.76%)
 Ligation Motif Present: 46,422,310 (68.68%)
Alignable (Normal+Chimeric Paired): 61,083,502 (90.37%)
Unique Reads: 56,129,336 (83.04%)
PCR Duplicates: 3,502,506 (5.18%)
Optical Duplicates: 1,451,660 (2.15%)
Library Complexity Estimate: 487,552,124
Intra-fragment Reads: 2,461,570 (3.64% / 4.39%)
Below MAPQ Threshold: 1,380,201 (2.04% / 2.46%)
Hi-C Contacts: 52,287,565 (77.36% / 93.16%)
 Ligation Motif Present: 23,696,920  (35.06% / 42.22%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,559,124  (9.70% / 11.69%)
Intra-chromosomal: 45,728,441  (67.65% / 81.47%)
Short Range (<20Kb): 13,378,178  (19.79% / 23.83%)
Long Range (>20Kb): 32,349,955  (47.86% / 57.63%)