Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Aqmac -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aqmac_VARYA/Aqmac_V3R.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aqmac_VARYA/Aqmac_V3R.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Aqmac_VARYA/Aqmac_V3R.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/Aqmac_V3R -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  179,430,766
 Normal Paired: 59,634,269 (33.24%)
 Chimeric Paired: 82,812,927 (46.15%)
 Chimeric Ambiguous: 22,021,310 (12.27%)
 Unmapped: 14,962,260 (8.34%)
 Ligation Motif Present: 76,454,489 (42.61%)
Alignable (Normal+Chimeric Paired): 142,447,196 (79.39%)
Unique Reads: 117,613,895 (65.55%)
PCR Duplicates: 23,775,201 (13.25%)
Optical Duplicates: 1,058,100 (0.59%)
Library Complexity Estimate: 371,830,280
Intra-fragment Reads: 7,458,309 (4.16% / 6.34%)
Below MAPQ Threshold: 17,245,002 (9.61% / 14.66%)
Hi-C Contacts: 92,910,584 (51.78% / 79.00%)
 Ligation Motif Present: 26,507,948  (14.77% / 22.54%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,703,034  (4.29% / 6.55%)
Intra-chromosomal: 85,207,550  (47.49% / 72.45%)
Short Range (<20Kb): 37,116,204  (20.69% / 31.56%)
Long Range (>20Kb): 48,091,045  (26.80% / 40.89%)