Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/20 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  1,238,005
 Normal Paired: 95,162 (7.69%)
 Chimeric Paired: 6,648 (0.54%)
 Chimeric Ambiguous: 2,547 (0.21%)
 Unmapped: 1,133,648 (91.57%)
 Ligation Motif Present: 21,820 (1.76%)
Alignable (Normal+Chimeric Paired): 101,810 (8.22%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Narimans_hi-c/20/aligned inter.txt
Intra-fragment Reads: 9,519 (0.77% / 9.66%)
Below MAPQ Threshold: 29,153 (2.35% / 29.59%)
Hi-C Contacts: 59,852 (4.83% / 60.75%)
 Ligation Motif Present: 14,657  (1.18% / 14.88%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,746  (1.11% / 13.95%)
Intra-chromosomal: 46,106  (3.72% / 46.80%)
Short Range (<20Kb): 16,309  (1.32% / 16.55%)
Long Range (>20Kb): 29,797  (2.41% / 30.24%)