Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/NR27 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/NR27 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  49,627,670
 Normal Paired: 26,949,758 (54.30%)
 Chimeric Paired: 14,067,709 (28.35%)
 Chimeric Ambiguous: 7,623,297 (15.36%)
 Unmapped: 986,906 (1.99%)
 Ligation Motif Present: 21,136,271 (42.59%)
Alignable (Normal+Chimeric Paired): 41,017,467 (82.65%)
Unique Reads: 29,397,831 (59.24%)
PCR Duplicates: 11,171,805 (22.51%)
Optical Duplicates: 447,831 (0.90%)
Library Complexity Estimate: 59,406,813
Intra-fragment Reads: 6,659,739 (13.42% / 22.65%)
Below MAPQ Threshold: 5,640,019 (11.36% / 19.19%)
Hi-C Contacts: 17,098,073 (34.45% / 58.16%)
 Ligation Motif Present: 6,669,515  (13.44% / 22.69%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,256,190  (6.56% / 11.08%)
Intra-chromosomal: 13,841,883  (27.89% / 47.08%)
Short Range (<20Kb): 6,302,580  (12.70% / 21.44%)
Long Range (>20Kb): 7,539,277  (15.19% / 25.65%)