Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/KF -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Chicken/KF -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  419,554,281
 Normal Paired: 359,268,678 (85.63%)
 Chimeric Paired: 27,548,344 (6.57%)
 Chimeric Ambiguous: 8,923,752 (2.13%)
 Unmapped: 23,813,507 (5.68%)
 Ligation Motif Present: 182,221,522 (43.43%)
Alignable (Normal+Chimeric Paired): 386,817,022 (92.20%)
Unique Reads: 345,908,778 (82.45%)
PCR Duplicates: 39,943,408 (9.52%)
Optical Duplicates: 964,836 (0.23%)
Library Complexity Estimate: 1,732,692,426
Intra-fragment Reads: 19,354,512 (4.61% / 5.60%)
Below MAPQ Threshold: 38,650,172 (9.21% / 11.17%)
Hi-C Contacts: 287,904,094 (68.62% / 83.23%)
 Ligation Motif Present: 119,751,792  (28.54% / 34.62%)
 3' Bias (Long Range): 69% - 31%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 98,016,066  (23.36% / 28.34%)
Intra-chromosomal: 189,888,028  (45.26% / 54.90%)
Short Range (<20Kb): 82,173,363  (19.59% / 23.76%)
Long Range (>20Kb): 107,712,919  (25.67% / 31.14%)