Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/MERY/NR -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/MERY/NR -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  164,081,160
 Normal Paired: 56,470,145 (34.42%)
 Chimeric Paired: 54,805,004 (33.40%)
 Chimeric Ambiguous: 18,044,622 (11.00%)
 Unmapped: 34,761,389 (21.19%)
 Ligation Motif Present: 109,209,179 (66.56%)
Alignable (Normal+Chimeric Paired): 111,275,149 (67.82%)
Unique Reads: 101,472,345 (61.84%)
PCR Duplicates: 8,919,582 (5.44%)
Optical Duplicates: 883,222 (0.54%)
Library Complexity Estimate: 645,809,504
Intra-fragment Reads: 2,932,097 (1.79% / 2.89%)
Below MAPQ Threshold: 13,979,197 (8.52% / 13.78%)
Hi-C Contacts: 84,561,051 (51.54% / 83.33%)
 Ligation Motif Present: 40,582,347  (24.73% / 39.99%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 39,216,080  (23.90% / 38.65%)
Intra-chromosomal: 45,344,971  (27.64% / 44.69%)
Short Range (<20Kb): 14,634,669  (8.92% / 14.42%)
Long Range (>20Kb): 30,710,231  (18.72% / 30.26%)