Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Mlig3 -p /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/Mlig3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  3,588,447
 Normal Paired: 3,009,310 (83.86%)
 Chimeric Paired: 63,501 (1.77%)
 Chimeric Ambiguous: 173,821 (4.84%)
 Unmapped: 341,815 (9.53%)
 Ligation Motif Present: 1,309,100 (36.48%)
Alignable (Normal+Chimeric Paired): 3,072,811 (85.63%)
Unique Reads: 2,696,160 (75.13%)
PCR Duplicates: 374,002 (10.42%)
Optical Duplicates: 2,649 (0.07%)
Library Complexity Estimate: 11,555,760
Intra-fragment Reads: 82,934 (2.31% / 3.08%)
Below MAPQ Threshold: 2,352,312 (65.55% / 87.25%)
Hi-C Contacts: 260,914 (7.27% / 9.68%)
 Ligation Motif Present: 99,040  (2.76% / 3.67%)
 3' Bias (Long Range): 58% - 42%
 Pair Type %(L-I-O-R): 27% - 23% - 23% - 27%
Inter-chromosomal: 165,899  (4.62% / 6.15%)
Intra-chromosomal: 95,015  (2.65% / 3.52%)
Short Range (<20Kb): 91,992  (2.56% / 3.41%)
Long Range (>20Kb): 3,019  (0.08% / 0.11%)