Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/VL9 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/VL9 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  77,785
 Normal Paired: 66,568 (85.58%)
 Chimeric Paired: 4,258 (5.47%)
 Chimeric Ambiguous: 2,237 (2.88%)
 Unmapped: 4,722 (6.07%)
 Ligation Motif Present: 23,353 (30.02%)
Alignable (Normal+Chimeric Paired): 70,826 (91.05%)
Unique Reads: 69,757 (89.68%)
PCR Duplicates: 444 (0.57%)
Optical Duplicates: 625 (0.80%)
Library Complexity Estimate: 5,526,327
Intra-fragment Reads: 11,460 (14.73% / 16.43%)
Below MAPQ Threshold: 18,434 (23.70% / 26.43%)
Hi-C Contacts: 39,863 (51.25% / 57.15%)
 Ligation Motif Present: 14,186  (18.24% / 20.34%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,477  (13.47% / 15.02%)
Intra-chromosomal: 29,386  (37.78% / 42.13%)
Short Range (<20Kb): 14,214  (18.27% / 20.38%)
Long Range (>20Kb): 15,172  (19.51% / 21.75%)