Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g xenTro10 -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/Paul_paper_november/xenopus_GSE197873_S33_rep1 -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/xenTro10/juicer.rs/xenTro10_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/xenTro10/xenTro10.chrom.sizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/xenTro10/xenTro10.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  858,563,493
 Normal Paired: 228,398,965 (26.60%)
 Chimeric Paired: 122,619,232 (14.28%)
 Chimeric Ambiguous: 59,363,529 (6.91%)
 Unmapped: 448,181,767 (52.20%)
 Ligation Motif Present: 661,354,088 (77.03%)
Alignable (Normal+Chimeric Paired): 351,018,197 (40.88%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-16T11:26:47,414]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 216,592,953 (25.23%)
PCR Duplicates: 134,425,244 (15.66%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 331,751,764
Intra-fragment Reads: 9,668,814 (1.13% / 4.46%)
Below MAPQ Threshold: 96,185,284 (11.20% / 44.41%)
Hi-C Contacts: 120,407,669 (14.02% / 55.59%)
 Ligation Motif Present: 91,271,293  (10.63% / 42.14%)
 3' Bias (Long Range): 73% - 27%
 Pair Type intra chrom %(L-I-O-R): 15% - 55% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 93.4%
Inter-chromosomal: 4,915,040  (0.57% / 2.27%)
Intra-chromosomal: 115,492,629  (13.45% / 53.32%)
Short Range (<20,000bp): 72,129,333  (8.40% / 33.30%)
Long Range (>20,000bp): 43,363,296  (5.05% / 20.02%)