Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/NR27 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/NR27 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  49,627,670
 Normal Paired: 26,949,758 (54.30%)
 Chimeric Paired: 14,067,709 (28.35%)
 Chimeric Ambiguous: 7,623,297 (15.36%)
 Unmapped: 986,906 (1.99%)
 Ligation Motif Present: 21,136,271 (42.59%)
Alignable (Normal+Chimeric Paired): 41,017,467 (82.65%)
Unique Reads: 29,397,831 (59.24%)
PCR Duplicates: 11,171,805 (22.51%)
Optical Duplicates: 447,831 (0.90%)
Library Complexity Estimate: 59,406,813
Intra-fragment Reads: 6,659,739 (13.42% / 22.65%)
Below MAPQ Threshold: 4,230,818 (8.53% / 14.39%)
Hi-C Contacts: 18,507,274 (37.29% / 62.95%)
 Ligation Motif Present: 7,137,902  (14.38% / 24.28%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,704,484  (7.46% / 12.60%)
Intra-chromosomal: 14,802,790  (29.83% / 50.35%)
Short Range (<20Kb): 6,624,707  (13.35% / 22.53%)
Long Range (>20Kb): 8,178,055  (16.48% / 27.82%)