Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NR/NR3 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n NR3 -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/MERY/NR3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  105,086,910
 Normal Paired: 49,938,526 (47.52%)
 Chimeric Paired: 35,861,984 (34.13%)
 Chimeric Ambiguous: 18,709,480 (17.80%)
 Unmapped: 576,920 (0.55%)
 Ligation Motif Present: 1,932,425 (1.84%)
Alignable (Normal+Chimeric Paired): 85,800,510 (81.65%)
Unique Reads: 83,180,918 (79.15%)
PCR Duplicates: 1,056,970 (1.01%)
Optical Duplicates: 1,562,622 (1.49%)
Library Complexity Estimate: 3,328,636,980
Intra-fragment Reads: 8,298,228 (7.90% / 9.98%)
Below MAPQ Threshold: 10,877,589 (10.35% / 13.08%)
Hi-C Contacts: 64,005,101 (60.91% / 76.95%)
 Ligation Motif Present: 890,915  (0.85% / 1.07%)
 3' Bias (Long Range): 70% - 30%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 20,813,647  (19.81% / 25.02%)
Intra-chromosomal: 43,191,454  (41.10% / 51.92%)
Short Range (<20Kb): 22,649,785  (21.55% / 27.23%)
Long Range (>20Kb): 20,541,573  (19.55% / 24.70%)