Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NR/NR3 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -n NR3 -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/MERY/NR3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  105,086,910
 Normal Paired: 49,938,526 (47.52%)
 Chimeric Paired: 35,861,984 (34.13%)
 Chimeric Ambiguous: 18,709,480 (17.80%)
 Unmapped: 576,920 (0.55%)
 Ligation Motif Present: 1,932,425 (1.84%)
Alignable (Normal+Chimeric Paired): 85,800,510 (81.65%)
Unique Reads: 83,180,918 (79.15%)
PCR Duplicates: 1,056,970 (1.01%)
Optical Duplicates: 1,562,622 (1.49%)
Library Complexity Estimate: 3,328,636,980
Intra-fragment Reads: 8,298,228 (7.90% / 9.98%)
Below MAPQ Threshold: 15,668,109 (14.91% / 18.84%)
Hi-C Contacts: 59,214,581 (56.35% / 71.19%)
 Ligation Motif Present: 829,073  (0.79% / 1.00%)
 3' Bias (Long Range): 71% - 29%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 18,622,214  (17.72% / 22.39%)
Intra-chromosomal: 40,592,367  (38.63% / 48.80%)
Short Range (<20Kb): 21,605,014  (20.56% / 25.97%)
Long Range (>20Kb): 18,987,260  (18.07% / 22.83%)