Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/NY/NRcomb -n NRcomb -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/NY/NRcomb -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Unique Reads: 50,406,824 PCR Duplicates: 21,153,265 Optical Duplicates: 736,418 Library Complexity Estimate: 95,780,799 Intra-fragment Reads: 10,237,186(20.31%) Below MAPQ Threshold: 9,912,858(19.67%) Hi-C Contacts: 30,256,780(60.03%) Ligation Motif Present: 13,422,926 (26.63%) 3' Bias (Long Range): 72% - 28% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 6,630,881 (13.15%) Intra-chromosomal: 23,625,899 (46.87%) Short Range (<20Kb): 11,151,929 (22.12%) Long Range (>20Kb): 12,473,928 (24.75%)