Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/VL27 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/VL27 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 143,342 Normal Paired: 116,585 (81.33%) Chimeric Paired: 12,530 (8.74%) Chimeric Ambiguous: 4,300 (3.00%) Unmapped: 9,927 (6.93%) Ligation Motif Present: 63,504 (44.30%) Alignable (Normal+Chimeric Paired): 129,115 (90.07%) Unique Reads: 127,537 (88.97%) PCR Duplicates: 209 (0.15%) Optical Duplicates: 1,369 (0.96%) Library Complexity Estimate: 38,998,173 Intra-fragment Reads: 9,052 (6.31% / 7.10%) Below MAPQ Threshold: 28,291 (19.74% / 22.18%) Hi-C Contacts: 90,194 (62.92% / 70.72%) Ligation Motif Present: 41,052 (28.64% / 32.19%) 3' Bias (Long Range): 79% - 21% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 15,671 (10.93% / 12.29%) Intra-chromosomal: 74,523 (51.99% / 58.43%) Short Range (<20Kb): 30,851 (21.52% / 24.19%) Long Range (>20Kb): 43,672 (30.47% / 34.24%)