Sequenced Read Pairs: 1,118,669 Normal Paired: 282,505 (25.25%) Chimeric Paired: 174,725 (15.62%) Chimeric Ambiguous: 78,680 (7.03%) Unmapped: 582,759 (52.09%) Ligation Motif Present: 445,672 (39.84%) Alignable (Normal+Chimeric Paired): 457,230 (40.87%) Unique Reads: 240,304 (21.48%) PCR Duplicates: 214,226 (19.15%) Optical Duplicates: 2,700 (0.24%) Library Complexity Estimate: 314,329 Intra-fragment Reads: 14,592 (1.30% / 6.07%) Below MAPQ Threshold: 11,515 (1.03% / 4.79%) Hi-C Contacts: 214,197 (19.15% / 89.14%) Ligation Motif Present: 91,753 (8.20% / 38.18%) 3' Bias (Long Range): 74% - 26% Pair Type intra chrom %(L-I-O-R): 17% - 50% - 16% - 17% Pair Type inter chrom %(L-I-O-R): 27% - 23% - 24% - 26% DE: 32% Cis/all (FF and RR orient): 99.5% Inter-chromosomal: 708 (0.06% / 0.29%) Intra-chromosomal: 213,489 (19.08% / 88.84%) Short Range (<20,000bp): 144,581 (12.92% / 60.17%) Long Range (>20,000bp): 68,908 (6.16% / 28.68%)