Experiment description: O129
Sequenced Read Pairs:  5,477,056
 Normal Paired: 989,796 (18.07%)
 Chimeric Paired: 608,067 (11.10%)
 Chimeric Ambiguous: 317,319 (5.79%)
 Unmapped: 3,561,874 (65.03%)
 Ligation Motif Present: 1,957,829 (35.75%)
Alignable (Normal+Chimeric Paired): 1,597,863 (29.17%)
Unique Reads: 571,129 (10.43%)
PCR Duplicates: 384,255 (7.02%)
Optical Duplicates: 642,479 (11.73%)
Library Complexity Estimate: 841,548
Intra-fragment Reads: 45,168 (0.82% / 7.91%)
Below MAPQ Threshold: 45,918 (0.84% / 8.04%)
Hi-C Contacts: 480,043 (8.76% / 84.05%)
 Ligation Motif Present: 278,465  (5.08% / 48.76%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 15% - 57% - 14% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 24% - 25%
 DE: 41%
 Cis/all (FF and RR orient): 99.9%
Inter-chromosomal: 418  (0.01% / 0.07%)
Intra-chromosomal: 479,625  (8.76% / 83.98%)
Short Range (<20,000bp): 323,207  (5.90% / 56.59%)
Long Range (>20,000bp): 156,418  (2.86% / 27.39%)