Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 17 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/estsoi/juicer1.6_compact-main/scripts/juicer.sh -g mm10 -d /data/estsoi/G1_G2_hic/G1_r1 -s none -z /data/estsoi/G1_G2_hic/genome/mm10.fa -D /home/estsoi/juicer1.6_compact-main -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  98,759
 Normal Paired: 48,396 (49.00%)
 Chimeric Paired: 35,508 (35.95%)
 Chimeric Ambiguous: 13,597 (13.77%)
 Unmapped: 1,258 (1.27%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 83,904 (84.96%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2026-05-19T00:57:37,299]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 83,800 (84.85%)
PCR Duplicates: 85 (0.09%)
Optical Duplicates: 19 (0.02%)
Library Complexity Estimate: 41,364,346
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 10,205 (10.33% / 12.18%)
Hi-C Contacts: 73,595 (74.52% / 87.82%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 50%
 Cis/all (FF and RR orient): 68.4%
Inter-chromosomal: 11,711  (11.86% / 13.97%)
Intra-chromosomal: 61,884  (62.66% / 73.85%)
Short Range (<20,000bp): 41,596  (42.12% / 49.64%)
Long Range (>20,000bp): 20,288  (20.54% / 24.21%)