Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 17 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/estsoi/juicer1.6_compact-main/scripts/juicer.sh -g mm10 -d /data/estsoi/G1_G2_hic/G1_r2 -s none -z /data/estsoi/G1_G2_hic/genome/mm10.fa -D /home/estsoi/juicer1.6_compact-main -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  97,020
 Normal Paired: 39,451 (40.66%)
 Chimeric Paired: 38,154 (39.33%)
 Chimeric Ambiguous: 18,892 (19.47%)
 Unmapped: 523 (0.54%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 77,605 (79.99%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2026-05-19T01:15:01,527]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 77,486 (79.87%)
PCR Duplicates: 109 (0.11%)
Optical Duplicates: 10 (0.01%)
Library Complexity Estimate: 27,593,321
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 14,969 (15.43% / 19.32%)
Hi-C Contacts: 62,517 (64.44% / 80.68%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 26% - 25%
 DE: 46%
 Cis/all (FF and RR orient): 64.8%
Inter-chromosomal: 12,040  (12.41% / 15.54%)
Intra-chromosomal: 50,477  (52.03% / 65.14%)
Short Range (<20,000bp): 33,317  (34.34% / 43.00%)
Long Range (>20,000bp): 17,160  (17.69% / 22.15%)