Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 17 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/estsoi/juicer1.6_compact-main/scripts/juicer.sh -g mm10 -d /data/estsoi/G1_G2_hic/G2_r1 -s none -z /data/estsoi/G1_G2_hic/genome/mm10.fa -D /home/estsoi/juicer1.6_compact-main -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  111,954
 Normal Paired: 55,300 (49.40%)
 Chimeric Paired: 37,300 (33.32%)
 Chimeric Ambiguous: 17,607 (15.73%)
 Unmapped: 1,747 (1.56%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 92,600 (82.71%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2026-05-19T01:31:17,573]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 92,378 (82.51%)
PCR Duplicates: 213 (0.19%)
Optical Duplicates: 9 (0.01%)
Library Complexity Estimate: 20,093,756
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 12,759 (11.40% / 13.81%)
Hi-C Contacts: 79,619 (71.12% / 86.19%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 58.0%
Inter-chromosomal: 14,604  (13.04% / 15.81%)
Intra-chromosomal: 65,015  (58.07% / 70.38%)
Short Range (<20,000bp): 48,035  (42.91% / 52.00%)
Long Range (>20,000bp): 16,980  (15.17% / 18.38%)