Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 17 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/estsoi/juicer1.6_compact-main/scripts/juicer.sh -g mm10 -d /data/estsoi/G1_G2_hic/G2_r2 -s none -z /data/estsoi/G1_G2_hic/genome/mm10.fa -D /home/estsoi/juicer1.6_compact-main -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  96,001
 Normal Paired: 38,953 (40.58%)
 Chimeric Paired: 37,934 (39.51%)
 Chimeric Ambiguous: 18,300 (19.06%)
 Unmapped: 814 (0.85%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 76,887 (80.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2026-05-19T01:47:36,634]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 76,691 (79.89%)
PCR Duplicates: 184 (0.19%)
Optical Duplicates: 12 (0.01%)
Library Complexity Estimate: 16,033,510
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 10,412 (10.85% / 13.58%)
Hi-C Contacts: 66,279 (69.04% / 86.42%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 47%
 Cis/all (FF and RR orient): 67.5%
Inter-chromosomal: 11,430  (11.91% / 14.90%)
Intra-chromosomal: 54,849  (57.13% / 71.52%)
Short Range (<20,000bp): 36,021  (37.52% / 46.97%)
Long Range (>20,000bp): 18,828  (19.61% / 24.55%)