Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/Control -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  191,940,881
 Normal Paired: 71,950,446 (37.49%)
 Chimeric Paired: 94,071,957 (49.01%)
 Chimeric Ambiguous: 20,386,393 (10.62%)
 Unmapped: 5,532,085 (2.88%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 166,022,403 (86.50%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-11T07:00:48,896]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 162,524,718 (84.67%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 3,497,685 (1.82%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 18,653,711 (9.72% / 11.48%)
Hi-C Contacts: 143,871,007 (74.96% / 88.52%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 16% - 52% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 30%
 Cis/all (FF and RR orient): 76.4%
Inter-chromosomal: 23,786,606  (12.39% / 14.64%)
Intra-chromosomal: 120,084,401  (62.56% / 73.89%)
Short Range (<20,000bp): 54,288,291  (28.28% / 33.40%)
Long Range (>20,000bp): 65,796,110  (34.28% / 40.48%)