Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.14" 2025-01-21; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/condensin_degron/11_A2 -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -c /storage3/estsoi/condensin_degron/11_A2.cool -q 1000 -n -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  30,292,354
 Normal Paired: 16,318,330 (53.87%)
 Chimeric Paired: 9,104,096 (30.05%)
 Chimeric Ambiguous: 4,148,545 (13.70%)
 Unmapped: 721,383 (2.38%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 25,422,426 (83.92%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T03:57:44,366]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 24,116,262 (79.61%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,306,164 (4.31%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,917,327 (9.63% / 12.10%)
Hi-C Contacts: 21,198,935 (69.98% / 87.90%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 15% - 56% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 36%
 Cis/all (FF and RR orient): 79.4%
Inter-chromosomal: 2,813,635  (9.29% / 11.67%)
Intra-chromosomal: 18,385,300  (60.69% / 76.24%)
Short Range (<20,000bp): 10,997,919  (36.31% / 45.60%)
Long Range (>20,000bp): 7,387,381  (24.39% / 30.63%)