Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.14" 2025-01-21; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/condensin_degron/7_A2 -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -c /storage3/estsoi/condensin_degron/7_A2.cool -q 1000 -n -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  49,791,914
 Normal Paired: 26,021,009 (52.26%)
 Chimeric Paired: 15,519,299 (31.17%)
 Chimeric Ambiguous: 7,005,849 (14.07%)
 Unmapped: 1,245,757 (2.50%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 41,540,308 (83.43%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T16:16:39,524]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 39,113,760 (78.55%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 2,426,548 (4.87%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,785,274 (9.61% / 12.23%)
Hi-C Contacts: 34,328,486 (68.94% / 87.77%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 58% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 78.3%
Inter-chromosomal: 4,613,532  (9.27% / 11.80%)
Intra-chromosomal: 29,714,954  (59.68% / 75.97%)
Short Range (<20,000bp): 18,261,837  (36.68% / 46.69%)
Long Range (>20,000bp): 11,453,117  (23.00% / 29.28%)