#!/bin/bash

for cool in /storage3/estsoi/new_hic_data/no_XY_10k/????_30.cool; do

hicAdjustMatrix -m ${cool} -o ${cool} -c chr1 chr2 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 -a keep

done
