Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.11" 2024-04-16; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -d /storage3/estsoi/singleCell/G2 -g mm10 -s MboI -y /home/estsoi/mm10_MboI.txt -p /home/estsoi/mm10.chrom.sizes -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  114,238,200
 Normal Paired: 66,318,935 (58.05%)
 Chimeric Paired: 34,666,931 (30.35%)
 Chimeric Ambiguous: 8,193,210 (7.17%)
 Unmapped: 5,059,124 (4.43%)
 Ligation Motif Present: 70,521,661 (61.73%)
Alignable (Normal+Chimeric Paired): 100,985,866 (88.40%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-06-21T14:49:47,644]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 48,671,412 (42.61%)
PCR Duplicates: 52,314,454 (45.79%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 59,640,730
Intra-fragment Reads: 6,922,369 (6.06% / 14.22%)
Below MAPQ Threshold: 9,691,491 (8.48% / 19.91%)
Hi-C Contacts: 38,979,921 (34.12% / 80.09%)
 Ligation Motif Present: 20,684,053  (18.11% / 42.50%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 12% - 63% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 48%
 Cis/all (FF and RR orient): 88.6%
Inter-chromosomal: 2,321,873  (2.03% / 4.77%)
Intra-chromosomal: 36,658,048  (32.09% / 75.32%)
Short Range (<20,000bp): 24,163,775  (21.15% / 49.65%)
Long Range (>20,000bp): 12,494,273  (10.94% / 25.67%)