Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.11" 2024-04-16; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -d /storage3/estsoi/singleCell/G2 -g mm10 -s MboI -y /home/estsoi/mm10_MboI.txt -p /home/estsoi/mm10.chrom.sizes -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  114,238,200
 Normal Paired: 66,318,935 (58.05%)
 Chimeric Paired: 34,666,931 (30.35%)
 Chimeric Ambiguous: 8,193,210 (7.17%)
 Unmapped: 5,059,124 (4.43%)
 Ligation Motif Present: 70,521,661 (61.73%)
Alignable (Normal+Chimeric Paired): 100,985,866 (88.40%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-06-21T14:49:47,644]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 48,671,412 (42.61%)
PCR Duplicates: 52,314,454 (45.79%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 59,640,730
Intra-fragment Reads: 6,922,369 (6.06% / 14.22%)
Below MAPQ Threshold: 11,929,889 (10.44% / 24.51%)
Hi-C Contacts: 36,741,523 (32.16% / 75.49%)
 Ligation Motif Present: 19,286,914  (16.88% / 39.63%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 50%
 Cis/all (FF and RR orient): 90.6%
Inter-chromosomal: 1,749,457  (1.53% / 3.59%)
Intra-chromosomal: 34,992,066  (30.63% / 71.89%)
Short Range (<20,000bp): 23,354,417  (20.44% / 47.98%)
Long Range (>20,000bp): 11,637,649  (10.19% / 23.91%)