Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.11" 2024-04-16; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -d /storage3/estsoi/singleCell/earl_S -g mm10 -s MboI -y /home/estsoi/mm10_MboI.txt -p /home/estsoi/mm10.chrom.sizes -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  193,843,627
 Normal Paired: 110,437,360 (56.97%)
 Chimeric Paired: 60,313,435 (31.11%)
 Chimeric Ambiguous: 14,663,384 (7.56%)
 Unmapped: 8,429,448 (4.35%)
 Ligation Motif Present: 115,690,549 (59.68%)
Alignable (Normal+Chimeric Paired): 170,750,795 (88.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-06-23T00:01:06,483]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 45,416,361 (23.43%)
PCR Duplicates: 125,334,434 (64.66%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 46,611,919
Intra-fragment Reads: 7,935,970 (4.09% / 17.47%)
Below MAPQ Threshold: 13,541,855 (6.99% / 29.82%)
Hi-C Contacts: 31,874,506 (16.44% / 70.18%)
 Ligation Motif Present: 16,801,325  (8.67% / 36.99%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 85.5%
Inter-chromosomal: 1,951,151  (1.01% / 4.30%)
Intra-chromosomal: 29,923,355  (15.44% / 65.89%)
Short Range (<20,000bp): 21,790,720  (11.24% / 47.98%)
Long Range (>20,000bp): 8,132,635  (4.20% / 17.91%)