Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.11" 2024-04-16; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -d /storage3/estsoi/singleCell/postM -g mm10 -s MboI -y /home/estsoi/mm10_MboI.txt -p /home/estsoi/mm10.chrom.sizes -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  21,319,634
 Normal Paired: 11,533,107 (54.10%)
 Chimeric Paired: 7,053,355 (33.08%)
 Chimeric Ambiguous: 1,727,337 (8.10%)
 Unmapped: 1,005,835 (4.72%)
 Ligation Motif Present: 13,517,822 (63.41%)
Alignable (Normal+Chimeric Paired): 18,586,462 (87.18%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-06-21T22:38:49,858]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 9,646,213 (45.25%)
PCR Duplicates: 8,940,249 (41.93%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 12,436,387
Intra-fragment Reads: 1,193,583 (5.60% / 12.37%)
Below MAPQ Threshold: 2,523,337 (11.84% / 26.16%)
Hi-C Contacts: 7,122,876 (33.41% / 73.84%)
 Ligation Motif Present: 4,103,833  (19.25% / 42.54%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 13% - 60% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 46%
 Cis/all (FF and RR orient): 96.0%
Inter-chromosomal: 152,363  (0.71% / 1.58%)
Intra-chromosomal: 6,970,513  (32.70% / 72.26%)
Short Range (<20,000bp): 3,870,128  (18.15% / 40.12%)
Long Range (>20,000bp): 3,100,385  (14.54% / 32.14%)