Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.11" 2024-04-16; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -d /storage3/estsoi/singleCell/preM -g mm10 -s MboI -y /home/estsoi/mm10_MboI.txt -p /home/estsoi/mm10.chrom.sizes -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  24,851,946
 Normal Paired: 13,986,258 (56.28%)
 Chimeric Paired: 7,831,541 (31.51%)
 Chimeric Ambiguous: 1,932,828 (7.78%)
 Unmapped: 1,101,319 (4.43%)
 Ligation Motif Present: 14,975,951 (60.26%)
Alignable (Normal+Chimeric Paired): 21,817,799 (87.79%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-06-21T21:55:55,985]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,528,068 (46.39%)
PCR Duplicates: 10,289,731 (41.40%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 15,072,252
Intra-fragment Reads: 1,577,993 (6.35% / 13.69%)
Below MAPQ Threshold: 2,379,265 (9.57% / 20.64%)
Hi-C Contacts: 9,148,803 (36.81% / 79.36%)
 Ligation Motif Present: 5,043,846  (20.30% / 43.75%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 13% - 62% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 47%
 Cis/all (FF and RR orient): 95.0%
Inter-chromosomal: 243,042  (0.98% / 2.11%)
Intra-chromosomal: 8,905,761  (35.84% / 77.25%)
Short Range (<20,000bp): 5,450,718  (21.93% / 47.28%)
Long Range (>20,000bp): 3,455,043  (13.90% / 29.97%)