Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.14" 2025-01-21; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/condensin_degron/11_C1 -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -c /storage3/estsoi/condensin_degron/11_C1.cool -q 1000 -n -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  54,958,408
 Normal Paired: 29,596,359 (53.85%)
 Chimeric Paired: 16,855,910 (30.67%)
 Chimeric Ambiguous: 7,022,536 (12.78%)
 Unmapped: 1,483,603 (2.70%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 46,452,269 (84.52%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T07:26:50,005]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 43,899,717 (79.88%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 2,552,552 (4.64%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,866,456 (14.31% / 17.92%)
Hi-C Contacts: 36,033,261 (65.56% / 82.08%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 61% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 42%
 Cis/all (FF and RR orient): 79.8%
Inter-chromosomal: 4,220,744  (7.68% / 9.61%)
Intra-chromosomal: 31,812,517  (57.88% / 72.47%)
Short Range (<20,000bp): 20,678,585  (37.63% / 47.10%)
Long Range (>20,000bp): 11,133,932  (20.26% / 25.36%)