Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202402181508milk2/hic/fastq_22-12-2023/CapH2_aux_r2 -p /mnt/scratch/ws/sykozyreva/202402181508milk2/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH2_aux_r2.hic -y /mnt/scratch/ws/sykozyreva/202402181508milk2/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202402181508milk2/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202402181508milk2/hic/CapH2_aux_r2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  38,439,705
 Normal Paired: 15,162,338 (39.44%)
 Chimeric Paired: 17,082,173 (44.44%)
 Chimeric Ambiguous: 6,136,503 (15.96%)
 Unmapped: 58,691 (0.15%)
 Ligation Motif Present: 32,621,894 (84.87%)
Alignable (Normal+Chimeric Paired): 32,244,511 (83.88%)
Unique Reads: 31,426,969 (81.76%)
PCR Duplicates: 123,102 (0.32%)
Optical Duplicates: 694,440 (1.81%)
Library Complexity Estimate: 4,032,493,548
Intra-fragment Reads: 2,145,269 (5.58% / 6.83%)
Below MAPQ Threshold: 3,333,096 (8.67% / 10.61%)
Hi-C Contacts: 25,948,604 (67.50% / 82.57%)
 Ligation Motif Present: 20,833,579  (54.20% / 66.29%)
 3' Bias (Long Range): 83% - 17%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 13% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 39%
 Cis/all (FF and RR orient): 76.6%
Inter-chromosomal: 3,719,662  (9.68% / 11.84%)
Intra-chromosomal: 22,228,942  (57.83% / 70.73%)
Short Range (<20,000bp): 13,943,912  (36.27% / 44.37%)
Long Range (>20,000bp): 8,285,030  (21.55% / 26.36%)