Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202402181508milk2/hic/fastq_22-12-2023/CapH2_aux_r2 -p /mnt/scratch/ws/sykozyreva/202402181508milk2/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH2_aux_r2.hic -y /mnt/scratch/ws/sykozyreva/202402181508milk2/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202402181508milk2/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202402181508milk2/hic/CapH2_aux_r2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  38,439,705
 Normal Paired: 15,162,338 (39.44%)
 Chimeric Paired: 17,082,173 (44.44%)
 Chimeric Ambiguous: 6,136,503 (15.96%)
 Unmapped: 58,691 (0.15%)
 Ligation Motif Present: 32,621,894 (84.87%)
Alignable (Normal+Chimeric Paired): 32,244,511 (83.88%)
Unique Reads: 31,426,969 (81.76%)
PCR Duplicates: 123,102 (0.32%)
Optical Duplicates: 694,440 (1.81%)
Library Complexity Estimate: 4,032,493,548
Intra-fragment Reads: 2,145,269 (5.58% / 6.83%)
Below MAPQ Threshold: 5,114,775 (13.31% / 16.28%)
Hi-C Contacts: 24,166,925 (62.87% / 76.90%)
 Ligation Motif Present: 19,421,119  (50.52% / 61.80%)
 3' Bias (Long Range): 83% - 17%
 Pair Type intra chrom %(L-I-O-R): 13% - 60% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 40%
 Cis/all (FF and RR orient): 77.4%
Inter-chromosomal: 3,281,042  (8.54% / 10.44%)
Intra-chromosomal: 20,885,883  (54.33% / 66.46%)
Short Range (<20,000bp): 13,253,347  (34.48% / 42.17%)
Long Range (>20,000bp): 7,632,536  (19.86% / 24.29%)