Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/A/CapH2_aux_R1 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH2_aux_r1.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH2_aux_r1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  120,995
 Normal Paired: 58,350 (48.23%)
 Chimeric Paired: 43,511 (35.96%)
 Chimeric Ambiguous: 17,212 (14.23%)
 Unmapped: 1,922 (1.59%)
 Ligation Motif Present: 86,566 (71.55%)
Alignable (Normal+Chimeric Paired): 101,861 (84.19%)
Unique Reads: 79,507 (65.71%)
PCR Duplicates: 20,795 (17.19%)
Optical Duplicates: 1,559 (1.29%)
Library Complexity Estimate: 207,158
Intra-fragment Reads: 7,118 (5.88% / 8.95%)
Below MAPQ Threshold: 12,358 (10.21% / 15.54%)
Hi-C Contacts: 60,031 (49.61% / 75.50%)
 Ligation Motif Present: 36,787  (30.40% / 46.27%)
 3' Bias (Long Range): 75% - 25%
 Pair Type intra chrom %(L-I-O-R): 15% - 54% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 24% - 26% - 25% - 25%
 DE: 33%
 Cis/all (FF and RR orient): 77.8%
Inter-chromosomal: 9,126  (7.54% / 11.48%)
Intra-chromosomal: 50,905  (42.07% / 64.03%)
Short Range (<20,000bp): 29,067  (24.02% / 36.56%)
Long Range (>20,000bp): 21,838  (18.05% / 27.47%)