Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/A/CapH2_aux_R2 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH2_aux_r2.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH2_aux_r2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  101,516
 Normal Paired: 41,169 (40.55%)
 Chimeric Paired: 41,813 (41.19%)
 Chimeric Ambiguous: 17,475 (17.21%)
 Unmapped: 1,059 (1.04%)
 Ligation Motif Present: 83,366 (82.12%)
Alignable (Normal+Chimeric Paired): 82,982 (81.74%)
Unique Reads: 64,735 (63.77%)
PCR Duplicates: 17,149 (16.89%)
Optical Duplicates: 1,098 (1.08%)
Library Complexity Estimate: 167,120
Intra-fragment Reads: 4,618 (4.55% / 7.13%)
Below MAPQ Threshold: 9,250 (9.11% / 14.29%)
Hi-C Contacts: 50,867 (50.11% / 78.58%)
 Ligation Motif Present: 39,734  (39.14% / 61.38%)
 3' Bias (Long Range): 82% - 18%
 Pair Type intra chrom %(L-I-O-R): 13% - 60% - 13% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 26% - 25%
 DE: 39%
 Cis/all (FF and RR orient): 73.8%
Inter-chromosomal: 8,153  (8.03% / 12.59%)
Intra-chromosomal: 42,714  (42.08% / 65.98%)
Short Range (<20,000bp): 26,900  (26.50% / 41.55%)
Long Range (>20,000bp): 15,814  (15.58% / 24.43%)