Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/A -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH_C_r1.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_C_r01 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  92,201
 Normal Paired: 46,448 (50.38%)
 Chimeric Paired: 29,301 (31.78%)
 Chimeric Ambiguous: 14,663 (15.90%)
 Unmapped: 1,789 (1.94%)
 Ligation Motif Present: 64,845 (70.33%)
Alignable (Normal+Chimeric Paired): 75,749 (82.16%)
Unique Reads: 60,134 (65.22%)
PCR Duplicates: 14,461 (15.68%)
Optical Duplicates: 1,154 (1.25%)
Library Complexity Estimate: 166,629
Intra-fragment Reads: 6,892 (7.47% / 11.46%)
Below MAPQ Threshold: 9,941 (10.78% / 16.53%)
Hi-C Contacts: 43,301 (46.96% / 72.01%)
 Ligation Motif Present: 27,708  (30.05% / 46.08%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 14% - 58% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 71.6%
Inter-chromosomal: 7,965  (8.64% / 13.25%)
Intra-chromosomal: 35,336  (38.32% / 58.76%)
Short Range (<20,000bp): 20,046  (21.74% / 33.34%)
Long Range (>20,000bp): 15,290  (16.58% / 25.43%)