Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/A/CapH_aux_R1 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH_aux_r1.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_aux_r1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  74,038
 Normal Paired: 31,123 (42.04%)
 Chimeric Paired: 29,691 (40.10%)
 Chimeric Ambiguous: 12,130 (16.38%)
 Unmapped: 1,094 (1.48%)
 Ligation Motif Present: 60,530 (81.76%)
Alignable (Normal+Chimeric Paired): 60,814 (82.14%)
Unique Reads: 49,477 (66.83%)
PCR Duplicates: 10,539 (14.23%)
Optical Duplicates: 798 (1.08%)
Library Complexity Estimate: 150,232
Intra-fragment Reads: 3,030 (4.09% / 6.12%)
Below MAPQ Threshold: 7,752 (10.47% / 15.67%)
Hi-C Contacts: 38,695 (52.26% / 78.21%)
 Ligation Motif Present: 28,136  (38.00% / 56.87%)
 3' Bias (Long Range): 80% - 20%
 Pair Type intra chrom %(L-I-O-R): 15% - 57% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 74.4%
Inter-chromosomal: 6,514  (8.80% / 13.17%)
Intra-chromosomal: 32,181  (43.47% / 65.04%)
Short Range (<20,000bp): 17,756  (23.98% / 35.89%)
Long Range (>20,000bp): 14,425  (19.48% / 29.15%)