Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/A/CapH_aux_R2 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH_aux_r2.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_aux_r2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  248,803
 Normal Paired: 116,690 (46.90%)
 Chimeric Paired: 92,632 (37.23%)
 Chimeric Ambiguous: 35,564 (14.29%)
 Unmapped: 3,917 (1.57%)
 Ligation Motif Present: 183,714 (73.84%)
Alignable (Normal+Chimeric Paired): 209,322 (84.13%)
Unique Reads: 160,589 (64.54%)
PCR Duplicates: 45,365 (18.23%)
Optical Duplicates: 3,368 (1.35%)
Library Complexity Estimate: 395,988
Intra-fragment Reads: 13,259 (5.33% / 8.26%)
Below MAPQ Threshold: 25,716 (10.34% / 16.01%)
Hi-C Contacts: 121,614 (48.88% / 75.73%)
 Ligation Motif Present: 78,428  (31.52% / 48.84%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 15% - 55% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 82.2%
Inter-chromosomal: 14,146  (5.69% / 8.81%)
Intra-chromosomal: 107,468  (43.19% / 66.92%)
Short Range (<20,000bp): 63,343  (25.46% / 39.44%)
Long Range (>20,000bp): 44,125  (17.73% / 27.48%)