Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/B/CapH2_C_R2 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH2_C_r2.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH2_C_r2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  158,498
 Normal Paired: 64,034 (40.40%)
 Chimeric Paired: 62,024 (39.13%)
 Chimeric Ambiguous: 31,465 (19.85%)
 Unmapped: 975 (0.62%)
 Ligation Motif Present: 132,906 (83.85%)
Alignable (Normal+Chimeric Paired): 126,058 (79.53%)
Unique Reads: 101,307 (63.92%)
PCR Duplicates: 23,650 (14.92%)
Optical Duplicates: 1,101 (0.69%)
Library Complexity Estimate: 286,992
Intra-fragment Reads: 6,937 (4.38% / 6.85%)
Below MAPQ Threshold: 14,701 (9.28% / 14.51%)
Hi-C Contacts: 79,669 (50.26% / 78.64%)
 Ligation Motif Present: 65,981  (41.63% / 65.13%)
 3' Bias (Long Range): 83% - 17%
 Pair Type intra chrom %(L-I-O-R): 13% - 62% - 12% - 13%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 41%
 Cis/all (FF and RR orient): 73.1%
Inter-chromosomal: 12,535  (7.91% / 12.37%)
Intra-chromosomal: 67,134  (42.36% / 66.27%)
Short Range (<20,000bp): 43,548  (27.48% / 42.99%)
Long Range (>20,000bp): 23,586  (14.88% / 23.28%)