Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/B/CapH2_aux_R1 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH2_aux_r1.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH2_aux_r1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  129,936
 Normal Paired: 62,201 (47.87%)
 Chimeric Paired: 47,699 (36.71%)
 Chimeric Ambiguous: 18,540 (14.27%)
 Unmapped: 1,496 (1.15%)
 Ligation Motif Present: 93,471 (71.94%)
Alignable (Normal+Chimeric Paired): 109,900 (84.58%)
Unique Reads: 87,474 (67.32%)
PCR Duplicates: 21,229 (16.34%)
Optical Duplicates: 1,197 (0.92%)
Library Complexity Estimate: 240,751
Intra-fragment Reads: 7,858 (6.05% / 8.98%)
Below MAPQ Threshold: 13,302 (10.24% / 15.21%)
Hi-C Contacts: 66,314 (51.04% / 75.81%)
 Ligation Motif Present: 40,844  (31.43% / 46.69%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 16% - 54% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 25% - 25%
 DE: 32%
 Cis/all (FF and RR orient): 78.1%
Inter-chromosomal: 9,916  (7.63% / 11.34%)
Intra-chromosomal: 56,398  (43.40% / 64.47%)
Short Range (<20,000bp): 31,921  (24.57% / 36.49%)
Long Range (>20,000bp): 24,477  (18.84% / 27.98%)