Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/B/CapH2_aux_R2 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH2_aux_r2.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH2_aux_r2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  106,433
 Normal Paired: 43,270 (40.65%)
 Chimeric Paired: 43,973 (41.32%)
 Chimeric Ambiguous: 18,437 (17.32%)
 Unmapped: 753 (0.71%)
 Ligation Motif Present: 87,787 (82.48%)
Alignable (Normal+Chimeric Paired): 87,243 (81.97%)
Unique Reads: 70,158 (65.92%)
PCR Duplicates: 16,329 (15.34%)
Optical Duplicates: 756 (0.71%)
Library Complexity Estimate: 199,199
Intra-fragment Reads: 5,067 (4.76% / 7.22%)
Below MAPQ Threshold: 9,750 (9.16% / 13.90%)
Hi-C Contacts: 55,341 (52.00% / 78.88%)
 Ligation Motif Present: 43,559  (40.93% / 62.09%)
 3' Bias (Long Range): 82% - 18%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 26% - 24% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 74.8%
Inter-chromosomal: 8,453  (7.94% / 12.05%)
Intra-chromosomal: 46,888  (44.05% / 66.83%)
Short Range (<20,000bp): 29,532  (27.75% / 42.09%)
Long Range (>20,000bp): 17,356  (16.31% / 24.74%)