Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/B/CapH_C_R1 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH_C_r1.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH_C_r1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  98,060
 Normal Paired: 50,470 (51.47%)
 Chimeric Paired: 30,789 (31.40%)
 Chimeric Ambiguous: 15,379 (15.68%)
 Unmapped: 1,422 (1.45%)
 Ligation Motif Present: 68,026 (69.37%)
Alignable (Normal+Chimeric Paired): 81,259 (82.87%)
Unique Reads: 65,992 (67.30%)
PCR Duplicates: 14,471 (14.76%)
Optical Duplicates: 796 (0.81%)
Library Complexity Estimate: 195,986
Intra-fragment Reads: 7,808 (7.96% / 11.83%)
Below MAPQ Threshold: 10,494 (10.70% / 15.90%)
Hi-C Contacts: 47,690 (48.63% / 72.27%)
 Ligation Motif Present: 30,338  (30.94% / 45.97%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 14% - 58% - 13% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 25% - 24%
 DE: 35%
 Cis/all (FF and RR orient): 71.5%
Inter-chromosomal: 8,913  (9.09% / 13.51%)
Intra-chromosomal: 38,777  (39.54% / 58.76%)
Short Range (<20,000bp): 22,312  (22.75% / 33.81%)
Long Range (>20,000bp): 16,465  (16.79% / 24.95%)