Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/B/CapH_aux_R1 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH_C_r1.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH_aux_r1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  79,824
 Normal Paired: 34,029 (42.63%)
 Chimeric Paired: 31,842 (39.89%)
 Chimeric Ambiguous: 13,147 (16.47%)
 Unmapped: 806 (1.01%)
 Ligation Motif Present: 65,119 (81.58%)
Alignable (Normal+Chimeric Paired): 65,871 (82.52%)
Unique Reads: 54,619 (68.42%)
PCR Duplicates: 10,663 (13.36%)
Optical Duplicates: 589 (0.74%)
Library Complexity Estimate: 177,426
Intra-fragment Reads: 3,372 (4.22% / 6.17%)
Below MAPQ Threshold: 8,289 (10.38% / 15.18%)
Hi-C Contacts: 42,958 (53.82% / 78.65%)
 Ligation Motif Present: 31,278  (39.18% / 57.27%)
 3' Bias (Long Range): 80% - 20%
 Pair Type intra chrom %(L-I-O-R): 14% - 57% - 14% - 15%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 26% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 74.2%
Inter-chromosomal: 7,252  (9.08% / 13.28%)
Intra-chromosomal: 35,706  (44.73% / 65.37%)
Short Range (<20,000bp): 19,849  (24.87% / 36.34%)
Long Range (>20,000bp): 15,857  (19.86% / 29.03%)