Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202312241214milk/fastq/B/CapH_aux_R2 -p /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.chrom.sizes -q 30 -n CapH_aux_r2.hic -y /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa -o /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH_aux_r2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  263,002
 Normal Paired: 124,154 (47.21%)
 Chimeric Paired: 98,679 (37.52%)
 Chimeric Ambiguous: 37,126 (14.12%)
 Unmapped: 3,043 (1.16%)
 Ligation Motif Present: 194,136 (73.82%)
Alignable (Normal+Chimeric Paired): 222,833 (84.73%)
Unique Reads: 175,148 (66.60%)
PCR Duplicates: 45,192 (17.18%)
Optical Duplicates: 2,493 (0.95%)
Library Complexity Estimate: 460,873
Intra-fragment Reads: 14,680 (5.58% / 8.38%)
Below MAPQ Threshold: 27,132 (10.32% / 15.49%)
Hi-C Contacts: 133,336 (50.70% / 76.13%)
 Ligation Motif Present: 86,133  (32.75% / 49.18%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 15% - 55% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 24% - 26% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 82.2%
Inter-chromosomal: 15,560  (5.92% / 8.88%)
Intra-chromosomal: 117,776  (44.78% / 67.24%)
Short Range (<20,000bp): 69,206  (26.31% / 39.51%)
Long Range (>20,000bp): 48,570  (18.47% / 27.73%)