[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 92201 sequences (13922351 bp)...
[M::mem_process_seqs] Processed 92201 reads in 72.291 CPU sec, 3.942 real sec
[main] Version: 0.7.12-r1039
[main] CMD: /mnt/storage/home/manuriddinov/Distributive/bwa-0.7.15/bwa mem -t 23 /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_C_r01/splits/CapH_C_r1_L001_R1_001.fastq.gz
[main] Real time: 14.551 sec; CPU: 74.545 sec
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 92201 sequences (13922351 bp)...
[M::mem_process_seqs] Processed 92201 reads in 81.957 CPU sec, 3.799 real sec
[main] Version: 0.7.12-r1039
[main] CMD: /mnt/storage/home/manuriddinov/Distributive/bwa-0.7.15/bwa mem -t 23 /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_C_r01/splits/CapH_C_r1_L001_R2_001.fastq.gz
[main] Real time: 22.974 sec; CPU: 84.355 sec
Picked up _JAVA_OPTIONS: -Xmx16384m
Picked up _JAVA_OPTIONS: -Xmx16384m
Error while reading graphs file: java.io.FileNotFoundException: /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_C_r01/aligned/CapH_C_r1.hic_.m (No such file or directory)
Picked up _JAVA_OPTIONS: -Xmx16384m
Picked up _JAVA_OPTIONS: -Xmx16384m