[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 74038 sequences (11179738 bp)...
[M::mem_process_seqs] Processed 74038 reads in 63.275 CPU sec, 3.197 real sec
[main] Version: 0.7.12-r1039
[main] CMD: /mnt/storage/home/manuriddinov/Distributive/bwa-0.7.15/bwa mem -t 23 /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_aux_r1/splits/CapH_aux_r1_L001_R1_001.fastq.gz
[main] Real time: 5.639 sec; CPU: 65.642 sec
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 74038 sequences (11179738 bp)...
[M::mem_process_seqs] Processed 74038 reads in 69.346 CPU sec, 3.337 real sec
[main] Version: 0.7.12-r1039
[main] CMD: /mnt/storage/home/manuriddinov/Distributive/bwa-0.7.15/bwa mem -t 23 /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_aux_r1/splits/CapH_aux_r1_L001_R2_001.fastq.gz
[main] Real time: 5.755 sec; CPU: 71.687 sec
Picked up _JAVA_OPTIONS: -Xmx16384m
Picked up _JAVA_OPTIONS: -Xmx16384m
Error while reading graphs file: java.io.FileNotFoundException: /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/A/CapH_aux_r1/aligned/CapH_aux_r1.hic_.m (No such file or directory)
Picked up _JAVA_OPTIONS: -Xmx16384m
Picked up _JAVA_OPTIONS: -Xmx16384m