[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 98060 sequences (14807060 bp)...
[M::mem_process_seqs] Processed 98060 reads in 76.576 CPU sec, 3.682 real sec
[main] Version: 0.7.12-r1039
[main] CMD: /mnt/storage/home/manuriddinov/Distributive/bwa-0.7.15/bwa mem -t 23 /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH_C_r1/splits/CapH_C_r1_R1_001.fastq.gz
[main] Real time: 6.164 sec; CPU: 78.971 sec
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 98060 sequences (14807060 bp)...
[M::mem_process_seqs] Processed 98060 reads in 89.806 CPU sec, 4.517 real sec
[main] Version: 0.7.12-r1039
[main] CMD: /mnt/storage/home/manuriddinov/Distributive/bwa-0.7.15/bwa mem -t 23 /mnt/scratch/ws/sykozyreva/202312241214milk/fasta/GRCm38.p6/GRCm38.p6.genome.fa /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH_C_r1/splits/CapH_C_r1_R2_001.fastq.gz
[main] Real time: 7.102 sec; CPU: 92.300 sec
Picked up _JAVA_OPTIONS: -Xmx16384m
Picked up _JAVA_OPTIONS: -Xmx16384m
Error while reading graphs file: java.io.FileNotFoundException: /mnt/scratch/ws/sykozyreva/202312241214milk/CapH/B/CapH_C_r1/aligned/CapH_C_r1.hic_.m (No such file or directory)
Picked up _JAVA_OPTIONS: -Xmx16384m
Picked up _JAVA_OPTIONS: -Xmx16384m