Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.14" 2025-01-21; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/condensin_degron/11_A1 -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -c /storage3/estsoi/condensin_degron/11_A1.cool -q 1000 -n -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  50,233,063
 Normal Paired: 26,458,231 (52.67%)
 Chimeric Paired: 15,513,169 (30.88%)
 Chimeric Ambiguous: 6,809,009 (13.55%)
 Unmapped: 1,452,654 (2.89%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 41,971,400 (83.55%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T01:11:57,237]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 39,869,752 (79.37%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 2,101,648 (4.18%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,532,329 (14.99% / 18.89%)
Hi-C Contacts: 32,337,423 (64.37% / 81.11%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 39%
 Cis/all (FF and RR orient): 79.3%
Inter-chromosomal: 4,047,471  (8.06% / 10.15%)
Intra-chromosomal: 28,289,952  (56.32% / 70.96%)
Short Range (<20,000bp): 17,586,683  (35.01% / 44.11%)
Long Range (>20,000bp): 10,703,269  (21.31% / 26.85%)